Lee Frecklington struck 15 minutes from time to hand Peter Jackson his first win as Lincoln boss. The hosts took a deserved lead two minutes before the break when Ben Wright got behind the defence and poked the ball past Kevin Pilkington.
County then drew level five minutes after the break with a 25-yard strike from midfielder Gary Silk.
But Frecklington settled the issue with time running out as his low drive from the edge of the box clinched victory.
Lincoln City: Smith, Green, Moses, Hone, Croft, Forrester, Kerr, Frecklington, Warlow (N'Guessan 70), Wright, Dodds.
Subs Not Used: Bencherif, Hand, John-Lewis, Marriott.
Goals: Wright 44, Frecklington 75.
Notts County: Pilkington, Canoville, Tann, Hunt, Mayo, Butcher, MacKenzie, Silk, Weston, Dudfield, Sam (Weir-Daley 80).
Subs Not Used: Somner, Lindfield, Pearce, Sandercombe.
Goals: Silk 50.
Att: 4,503.
Ref: Paul Melin (Surrey).
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